Package: netgsa 4.0.3

netgsa: Network-Based Gene Set Analysis

Carry out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. Implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>

Authors:Michael Hellstern [aut, cre], Ali Shojaie [aut], Jing Ma [aut], Kun Yue [aut]

netgsa_4.0.3.tar.gz
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netgsa_4.0.3.tgz(r-4.4-x86_64)netgsa_4.0.3.tgz(r-4.4-arm64)netgsa_4.0.3.tgz(r-4.3-x86_64)netgsa_4.0.3.tgz(r-4.3-arm64)
netgsa_4.0.3.tar.gz(r-4.5-noble)netgsa_4.0.3.tar.gz(r-4.4-noble)
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netgsa.pdf |netgsa.html✨
netgsa/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/mikehellstern/netgsa/issues

On CRAN:

10 exports 4 stars 1.34 score 92 dependencies 1 mentions 28 scripts 433 downloads

Last updated 3 years agofrom:2769cf0806. Checks:ERROR: 9. Indexed: yes.

Exports:bic.netEst.undirformatPathwaysnetEst.dirnetEst.undirNetGSANetGSAqobtainEdgeListplot.NetGSAprepareAdjMatzoomPathway

Dependencies:AnnotationDbiaskpassbabelgenebackportsbase64encbase64urlBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemcaToolsclicodetoolscorpcorcpp11crayoncurldata.tableDBIdigestdplyrevaluatefansifastmapforeachfsgenericsGenomeInfoDbGenomeInfoDbDataglassoFastglmnetgluegplotsgraphgraphitegtoolshtmltoolshttrigraphIRangesIRdisplayIRkerneliteratorsjsonliteKEGGRESTKernSmoothlatticelifecyclemagrittrMatrixmemoisemimemsigdbropensslorg.Hs.eg.dbpbdZMQpillarpkgconfigplogrpngpurrrquadprogR6rappdirsRColorBrewerRcppRcppEigenRCurlRCy3reprRJSONIOrlangRSQLiteS4VectorsshapestringisurvivalsystibbletidyselectUCSC.utilsutf8uuidvctrswithrXMLXVectorzlibbioc